Basic Statistics
Measure | Value |
---|---|
Filename | SRR2093872_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7366523 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 34 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTAT | 17832 | 0.2420680692913061 | TruSeq Adapter, Index 25 (97% over 44bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCATAAC | 10835 | 0.0 | 57.88511 | 1 |
GAGCACA | 6195 | 0.0 | 57.0275 | 9 |
AGAGCAC | 6750 | 0.0 | 52.546814 | 8 |
CATAACT | 12140 | 0.0 | 51.820007 | 2 |
CGATAAC | 10010 | 0.0 | 50.32166 | 1 |
GATCGGA | 7415 | 0.0 | 48.052937 | 1 |
GATAACT | 10815 | 0.0 | 46.942432 | 2 |
TCGGAAG | 7805 | 0.0 | 45.866478 | 3 |
CGGAAGA | 9140 | 0.0 | 39.372227 | 4 |
GGAAGAG | 9550 | 0.0 | 37.82781 | 5 |
GAAGAGC | 9585 | 0.0 | 37.15145 | 6 |
ATCGGAA | 9950 | 0.0 | 35.994316 | 2 |
CGTCTGA | 5765 | 0.0 | 35.1955 | 16-17 |
CACACGT | 5955 | 0.0 | 33.915173 | 12-13 |
CCAGTCA | 5880 | 0.0 | 33.808502 | 26-27 |
AGTCACA | 3915 | 0.0 | 32.75912 | 28-29 |
TGCCGTC | 5255 | 0.0 | 32.651455 | 50-51 |
CACGTCT | 6300 | 0.0 | 32.169483 | 14-15 |
CACACTG | 2990 | 0.0 | 32.078365 | 30-31 |
AGCACAC | 6385 | 0.0 | 31.994835 | 10-11 |