FastQCFastQC Report
Thu 14 Mar 2019
SRR2093872_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2093872_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7366523
Sequences flagged as poor quality0
Sequence length100
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTGATATATCTCGTAT178320.2420680692913061TruSeq Adapter, Index 25 (97% over 44bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCATAAC108350.057.885111
GAGCACA61950.057.02759
AGAGCAC67500.052.5468148
CATAACT121400.051.8200072
CGATAAC100100.050.321661
GATCGGA74150.048.0529371
GATAACT108150.046.9424322
TCGGAAG78050.045.8664783
CGGAAGA91400.039.3722274
GGAAGAG95500.037.827815
GAAGAGC95850.037.151456
ATCGGAA99500.035.9943162
CGTCTGA57650.035.195516-17
CACACGT59550.033.91517312-13
CCAGTCA58800.033.80850226-27
AGTCACA39150.032.7591228-29
TGCCGTC52550.032.65145550-51
CACGTCT63000.032.16948314-15
CACACTG29900.032.07836530-31
AGCACAC63850.031.99483510-11