Basic Statistics
Measure | Value |
---|---|
Filename | SRR2093871_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7022387 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC | 10409 | 0.1482259522296336 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCCG | 1620 | 0.0 | 34.96001 | 44-45 |
GGTCGCC | 1605 | 0.0 | 34.847485 | 44-45 |
GATCTCG | 1865 | 0.0 | 31.249226 | 34-35 |
CTCGGTG | 1985 | 0.0 | 28.294817 | 38-39 |
ATCTCGG | 2115 | 0.0 | 27.888798 | 36-37 |
AGAGCGT | 4365 | 0.0 | 26.703234 | 9 |
GCGTCGT | 2170 | 0.0 | 26.099085 | 12-13 |
TCGGAAG | 4865 | 0.0 | 25.794365 | 4 |
TGGTCGC | 2125 | 0.0 | 25.54598 | 42-43 |
GAGCGTC | 2275 | 0.0 | 25.514202 | 10-11 |
AGCGTCG | 2305 | 0.0 | 24.77432 | 10-11 |
GTGGTCG | 2230 | 0.0 | 23.816233 | 42-43 |
TCTCGGT | 2445 | 0.0 | 23.163523 | 36-37 |
GATCGGA | 5525 | 0.0 | 23.138384 | 2 |
AAGAGCG | 5220 | 0.0 | 23.049732 | 8 |
TCGCCGT | 2355 | 0.0 | 22.951256 | 46-47 |
CGCCGTA | 2505 | 0.0 | 22.515055 | 46-47 |
GTGTAGG | 2580 | 0.0 | 22.40706 | 16-17 |
AGATCTC | 2630 | 0.0 | 21.891563 | 34-35 |
CGGAAGA | 5705 | 0.0 | 21.584503 | 5 |