Basic Statistics
Measure | Value |
---|---|
Filename | SRR2093871_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7022387 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 36 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT | 13011 | 0.18527888024399683 | TruSeq Adapter, Index 18 (97% over 40bp) |
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTA | 7818 | 0.11132966610925886 | TruSeq Adapter, Index 18 (97% over 40bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCACA | 5255 | 0.0 | 49.98884 | 9 |
AGAGCAC | 6160 | 0.0 | 43.02246 | 8 |
CGTCTGA | 5135 | 0.0 | 36.41996 | 16-17 |
ACGTCCG | 3235 | 0.0 | 36.1039 | 32-33 |
CACACGT | 5225 | 0.0 | 36.065506 | 12-13 |
TCGGAAG | 7480 | 0.0 | 35.367695 | 3 |
CCGCACA | 3270 | 0.0 | 35.35587 | 36-37 |
CCAGTCA | 5325 | 0.0 | 34.596558 | 26-27 |
CACGTCT | 5630 | 0.0 | 33.471096 | 14-15 |
AGTCACG | 5125 | 0.0 | 33.337826 | 28-29 |
GATCGGA | 8010 | 0.0 | 32.967243 | 1 |
CGGAAGA | 8090 | 0.0 | 32.758762 | 4 |
AGCACAC | 5835 | 0.0 | 32.69785 | 10-11 |
GAAGAGC | 8575 | 0.0 | 31.125118 | 6 |
GGAAGAG | 9305 | 0.0 | 29.08727 | 5 |
TGCCGTC | 5595 | 0.0 | 28.520298 | 50-51 |
TCACGTC | 4090 | 0.0 | 28.500368 | 30-31 |
ATCGGAA | 9665 | 0.0 | 27.58522 | 2 |
TCTGAAC | 6865 | 0.0 | 27.55043 | 18-19 |
GCACATC | 4110 | 0.0 | 27.332718 | 38-39 |